Cell & Molecular Biology

Cell & Molecular Biology

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21-40 of 41 ARTICLES
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https://doi.org/10.12688/f1000research.133479.2
Data Note metrics
Revised
The identification of high-performing antibodies for Coiled-coil-helix-coiled-coil-helix domain containing protein 10 (CHCHD10) for use in Western Blot, immunoprecipitation and immunofluorescence
[version 2; peer review: 2 approved, 1 approved with reservations]
Riham Ayoubi, Walaa Alshafie, Kathleen Southern, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group
Peer Reviewers Yang Liu; Derek P. Narendra; Andrew D. Nguyen
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • Mitacs
  • Genome Quebec
  • Genome Canada
LATEST VERSION PUBLISHED 26 Jul 2023
https://doi.org/10.12688/f1000research.131852.2
Data Note metrics
Revised
The identification of high-performing antibodies for TDP-43 for use in Western Blot, immunoprecipitation and immunofluorescence
[version 2; peer review: 2 approved]
Donovan Worrall, Riham Ayoubi, Maryam Fotouhi, Kathleen Southern, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF Consortium
Peer Reviewers Makoto Urushitani; Seiji Watanabe
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • ALS Society of Canada
  • ALS Association
  • Motor Neurone Disease Association
  • Genome Quebec
  • Mitacs
  • Genome Canada
LATEST VERSION PUBLISHED 20 Jun 2023
https://doi.org/10.12688/f1000research.128716.2
Review metrics
Revised
Circadian clocks in health and disease: Dissecting the roles of the biological pacemaker in cancer
[version 2; peer review: 2 approved]
Bridget M. Fortin, Alisa L. Mahieu, Rachel C. Fellows, Nicholas R. Pannunzio, Selma Masri
Peer Reviewers Phillip Karpowicz; Kristin Eckel-Mahan
  • Funders
  • American Cancer Society
  • National Institutes of Health
  • Johnson and Johnson
  • V Foundation for Cancer Research
LATEST VERSION PUBLISHED 16 May 2023
https://doi.org/10.12688/f1000research.121829.3
Research Article metrics
Revised
Integration of single-cell RNA-Seq and CyTOF data characterises heterogeneity of rare cell subpopulations
[version 3; peer review: 1 approved, 1 approved with reservations]
Emmanouela Repapi, Devika Agarwal, Giorgio Napolitani, David Sims, Stephen Taylor
Peer Reviewers Tallulah Andrews; Xiang Chen
  • Funders
  • Wellcome
  • UK Research and Innovation
LATEST VERSION PUBLISHED 02 May 2023
https://doi.org/10.12688/f1000research.132670.1
Research Article metrics
Evaluation of serum complement C4 among COVID-19 patients in Khartoum state: a case control-based study
[version 1; peer review: 2 approved, 1 approved with reservations]
Mohammed Yahya, Yousif Ali Rahamtalla, Nasr Mohammed Nasr, Babbiker Mohammed Taher Gorish
Peer Reviewers Adnan Mezher Maysam; Marwa Hameed Alkhafaji; Andang Miatmoko
PUBLISHED 21 Apr 2023
https://doi.org/10.12688/f1000research.131851.1
Data Note metrics
The identification of high-preforming antibodies for Ubiquilin-2 for use in Western Blot, immunoprecipitation, and immunofluorescence
[version 1; peer review: 2 approved]
Ian McDowell, Riham Ayoubi, Maryam Fotouhi, Kathleen Southern, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF Consortium
Peer Reviewers Mervyn Monteiro; Carlos Castaneda
  • Funders
  • Ontario Genomics
  • ALS Society of Canada
  • ALS Association
  • Motor Neurone Disease Association
  • Genome Quebec
  • Mitacs
  • Genome Canada
  • Canadian Institutes of Health Research
PUBLISHED 30 Mar 2023
https://doi.org/10.12688/f1000research.132249.1
Data Note metrics
The identification of high-performing antibodies for Profilin-1 for use in Western blot, immunoprecipitation and immunofluorescence
[version 1; peer review: 1 approved, 2 approved with reservations]
Riham Ayoubi, Ian McDowell, Maryam Fotouhi, Kathleen Southern, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF Consortium
Peer Reviewers Partha Roy; Jieya Shao; Xiaoyan Du
  • Funders
  • Ontario Genomics
  • ALS Society of Canada
  • Canadian Institutes of Health Research Foundation
  • ALS Association
  • Motor Neurone Disease Association
  • Mitacs
  • Genome Quebec
  • Genome Canada
PUBLISHED 29 Mar 2023
https://doi.org/10.12688/f1000research.126096.1
Research Article metrics
Comparison of BiP and HSP70i as markers of unfolded protein response (UPR) in segmental and nonsegmental vitiligo
[version 1; peer review: 2 approved with reservations]
Boedhy Setyanto, Handono Kalim, Sri Poeranto, Dhelya Widasmara
Peer Reviewers Mitesh Dwivedi; Shintaro Inoue
PUBLISHED 28 Mar 2023
https://doi.org/10.12688/f1000research.131333.1
Data Note metrics
The identification of high-performing antibodies for transmembrane protein 106B (TMEM106B) for use in Western blot, immunoprecipitation, and immunofluorescence
[version 1; peer review: 1 approved, 2 approved with reservations]
Riham Ayoubi, Maryam Fotouhi, Kathleen Southern, Ritika Bhajiawala, Rebeka Fanti, Panagiotis Prinos, Peter S. McPherson, Carl Laflamme, NeuroSGC/YCharOS/EDDU collaborative group, ABIF Consortium
Peer Reviewers Dawn Smallwood; Christian Peter Moritz; Giuseppe Legname
  • Funders
  • Ontario Genomics
  • Canadian Institutes of Health Research Foundation
  • ALS Canada
  • ALS Association
  • Motor Neurone Disease Association
  • Genome Quebec
  • Mitacs
  • Genome Canada
PUBLISHED 21 Mar 2023
https://doi.org/10.12688/f1000research.128583.1
Research Article metrics
Blood RNA and protein biomarkers are associated with vaping and dual use, and prospective health outcomes
[version 1; peer review: 2 approved with reservations]
Andrew Gregory, Zhonghui Xu, Katherine Pratte, Seth Berman, Robin Lu, Rahul Suryadevara, Robert Chase, Jeong H. Yun, Aabida Saferali, Craig P. Hersh, Edwin K. Silverman, Russell P. Bowler, Laura E. Crotty Alexander, Adel Boueiz, Peter J. Castaldi
Peer Reviewers John W Holloway; Fatema Shafie Khorassani
  • Funder
  • National Heart, Lung, and Blood Institute
PUBLISHED 02 Feb 2023
https://doi.org/10.12688/f1000research.124632.2
Data Note metrics
Revised
Identification of highly specific antibodies for Serine/threonine-protein kinase TBK1 for use in immunoblot, immunoprecipitation and immunofluorescence
[version 2; peer review: 2 approved]
Walaa Alshafie, Maryam Fotouhi, Irina Shlaifer, Riham Ayoubi, Aled M. Edwards, Thomas M. Durcan, Peter S. McPherson, Carl Laflamme
Peer Reviewers Nicolas Charlet; Simon L. Goodman
  • Funders
  • Ontario Genomics
  • Motor Neurone Disease Association (UK)
  • ALS Society of Canada
  • ALS Association
  • Mitacs
  • Genome Canada
  • Canadian Institutes of Health Research
LATEST VERSION PUBLISHED 24 Nov 2022
https://doi.org/10.12688/f1000research.109027.2
Software Tool Article metrics
Revised
Exploring causal relationships in proteomic profiles in Cytoscape using the CausalPath App
[version 2; peer review: 1 approved, 1 approved with reservations]
Pritam Saha, Özgun Babur, Chris Sander, Augustin Luna
Peer Reviewers Ruth Isserlin; Katsuyuki Yugi
  • Funders
  • Google
  • National Institute of General Medical Sciences
LATEST VERSION PUBLISHED 14 Nov 2022
https://doi.org/10.12688/f1000research.127129.1
Research Article metrics AWAITING PEER REVIEW
Gastroprotective effect of Zinnia elegans extracts against ethanol-induced gastric mucosal damage through downregulation of TLR4 and inflammatory cytokines
[version 1; peer review: awaiting peer review]
Zinah Essam Hameed, Saja Majeed Shareef, Laith G. Shareef, Khulood Majid Alsaraf
Peer Reviewers Invited
PUBLISHED 07 Nov 2022
https://doi.org/10.12688/f1000research.124658.2
Research Article metrics
Revised
A methylbenzimidazole derivative regulates mammalian circadian rhythms by targeting Cryptochrome proteins
[version 2; peer review: 2 approved]
Moeri Yagi, Simon Miller, Yoshiko Nagai, Shinsuke Inuki, Ayato Sato, Tsuyoshi Hirota
Peer Reviewers Eric Zhang; Katja A. Lamia
  • Funders
  • Takeda Science Foundation
  • Tokyo Biochemical Research Foundation
  • Hitachi Global Foundation
  • Japan Society for the Promotion of Science
LATEST VERSION PUBLISHED 31 Oct 2022
https://doi.org/10.12688/f1000research.122390.1
Research Article metrics
Inflammatory cytokines affecting cardiovascular function: a scoping review
[version 1; peer review: 2 approved with reservations, 1 not approved]
Risma Aprianda Kristanti, Taufan Bramantoro, Pratiwi Soesilawati, Ninuk Hariyani, Arief Suryadinata, Bambang Purwanto, Alexander Patera Nugraha, Tengku Natasha Eleena binti Tengku Ahmad Noor
Peer Reviewers Thiago Bruder-Nascimento; Nikolaos Chrysanthakopoulos; Zhenguo Liu
PUBLISHED 21 Sep 2022
https://doi.org/10.12688/f1000research.72904.2
Research Article metrics
Revised
Prediction of the effects of the top 10 nonsynonymous variants from 30229 SARS-CoV-2 strains on their proteins
[version 2; peer review: 2 approved]
Boon Zhan Sia, Wan Xin Boon, Yoke Yee Yap, Shalini Kumar, Chong Han Ng
Peer Reviewers Ujwal Ranjit Bagal and Vishal Nayak; In-Hee Lee
  • Funder
  • Multimedia University
LATEST VERSION PUBLISHED 18 May 2022
https://doi.org/10.12688/f1000research.76154.1
Software Tool Article metrics
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
[version 1; peer review: 2 approved with reservations]
Jacob Hanimann, Holger Moch, Martin Zoche, Abdullah Kahraman
Peer Reviewers James D Stephenson; Laurens van de Wiel
PUBLISHED 31 Mar 2022
https://doi.org/10.12688/f1000research.107925.1
Software Tool Article metrics
NIFtHool: an informatics program for identification of NifH proteins using deep neural networks
[version 1; peer review: 2 approved]
Jefferson Daniel Suquilanda-Pesántez, Evelyn Dayana Aguiar Salazar, Diego Almeida-Galárraga, Graciela Salum, Fernando Villalba-Meneses, Marco Esteban Gudiño Gomezjurado
Peer Reviewers Juan Onofre Orozco-López; Lorena Isabel Barona López
PUBLISHED 09 Feb 2022
https://doi.org/10.12688/f1000research.28225.2
Research Article metrics
Revised
Human Proteinase 3, an important autoantigen of c-ANCA associated vasculitis, shares cross-reactive epitopes with serine protease allergens from mites: an in silico analysis
[version 2; peer review: 1 approved, 2 approved with reservations]
Emiro Buendía, Múnera Marlon, Orlando Parra, María Sánchez, Andrés Sánchez, Jorge Sánchez, Diego Viasus
Peer Reviewers Chandrabose Selvaraj; Tomas Erban; Hiroshi Tanaka
  • Funder
  • Fondo Nacional de Financiamiento para la Ciencia, la Tecnología y la Innovación
LATEST VERSION PUBLISHED 03 Feb 2022
https://doi.org/10.12688/f1000research.53364.1
Research Article metrics
Comparison of two multiplexed technologies for profiling >1,000 serum proteins that may associate with tumor burden
[version 1; peer review: 2 approved, 1 approved with reservations]
Annie Ren, Ioannis Prassas, Vijithan Sugumar, Antoninus Soosaipillai, Marcus Bernardini, Eleftherios P Diamandis, Vathany Kulasingam
Peer Reviewers Nivedita Chowdhury; Anna E Lokshin; Stefan Holdenrieder
  • Funder
  • Mount Sinai Hospital
PUBLISHED 28 Jun 2021
21-40 of 41 ARTICLES
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