Genomics and Genetics

Genomics and Genetics

Genome Sequencing

track_changes Track Tracking Be alerted when new articles are added in this gateway (manage your tracking alerts via your account) Stop tracking this gateway
Home Gateways Genomics and Genetics
21-40 of 70 ARTICLES
Previous Next
 in 
https://doi.org/10.12688/f1000research.140344.2
Research Article metrics
Revised
NCBench: providing an open, reproducible, transparent, adaptable, and continuous benchmark approach for DNA-sequencing-based variant calling
[version 2; peer review: 2 approved]
Friederike Hanssen, Gisela Gabernet, Famke Bäuerle, Bianca Stöcker, Felix Wiegand, Nicholas H. Smith, Christian Mertes, Avirup Guha Neogi, Leon Brandhoff, Anna Ossowski, Janine Altmueller, Kerstin Becker, Andreas Petzold, Marc Sturm, Tyll Stöcker, Sugirthan Sivalingam, Fabian Brand, Axel Schmidt, Andreas Buness, Alexander J. Probst, Susanne Motameny, Johannes Köster
Peer Reviewers Justin M. Zook; Kez Cleal
  • Funders
  • German Federal Ministry for Education and Research
  • Deutsche Forschungsgemeinschaft
LATEST VERSION PUBLISHED 12 Sep 2024
https://doi.org/10.12688/f1000research.144352.2
Genome Note metrics
Revised
A reference genome, mitochondrial genome and associated transcriptomes for the critically endangered swift parrot (Lathamus discolor)
[version 2; peer review: 2 approved, 1 approved with reservations]
Luke W. Silver, Dejan Stojanovic, Katherine A. Farquharson, Lauren Alexander, Emma Peel, Katherine Belov, Carolyn J. Hogg
Peer Reviewers Charles Feigin; Phred Benham; Joan Ferrer Obiol
  • Funders
  • NCRIS funded BioPlatforms Threatened Species Initiative
  • Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science
LATEST VERSION PUBLISHED 27 Aug 2024
https://doi.org/10.12688/f1000research.150836.2
Genome Note metrics
Revised
The genomes of the aquarium sponges Tethya wilhelma and Tethya minuta (Porifera: Demospongiae)
[version 2; peer review: 2 approved]
Gert Wörheide, Warren R. Francis, Fabian Deister, Stefan Krebs, Dirk Erpenbeck, Sergio Vargas
Peer Reviewers Bernie Degnan; Eric Bautista-Guerrero
  • Funders
  • Deutsche Forschungsgemeinschaft
  • Villum Fonden
  • H2020 Marie Skłodowska-Curie Actions
  • LMUexcellent
LATEST VERSION PUBLISHED 01 Aug 2024
https://doi.org/10.12688/f1000research.139906.2
Data Note metrics
Revised
A compilation of histidine kinase genes in the genome of a tissue macerating Pectobacterium brasiliense isolated from potato in South Africa
[version 2; peer review: 1 approved]
Sarah Oluwatobi Otun, Khayalethu Ntushelo
Peer Reviewers Iris Yedidia
LATEST VERSION PUBLISHED 17 Jun 2024
https://doi.org/10.12688/f1000research.144007.1
Genome Note metrics
Isolation and complete genome sequence of Aeromonas bacteriophage Gekk3-15
[version 1; peer review: 2 approved, 1 approved with reservations]
A.K. Golomidova, E.E. Kulikov, A.S. Kuznetsov, P. Yu. Pechenov, I.S. Belalov, A.V. Letarov, E.E. Galyov
Peer Reviewers Ruben Avendaño-Herrera; Ben Temperton and Liam Boot-Handford; Reham M El Tarabili
  • Funders
  • Ministry of Science and Higher Education of the Russian Federation
  • Biotechnology and Biological Sciences Research Council
PUBLISHED 24 Apr 2024
https://doi.org/10.12688/f1000research.148511.1
Genome Note metrics
Two draft genomes of enigmatic Solenogastres (Mollusca, Aplacophora) Epimenia babai and Neomenia megatrapezata
[version 1; peer review: 1 approved, 1 approved with reservations]
Meghan K. Yap-Chiongco, Stacy Pirro, Rebecca M. Varney, Hiroshi Saito, Kenneth M. Halanych, Kevin M. Kocot
Peer Reviewers Gloria Arriagada; Alice Dennis
  • Funders
  • Iridian Genomes
  • National Science Foundation
PUBLISHED 23 Apr 2024
https://doi.org/10.12688/f1000research.144155.1
Genome Note metrics
Long-read datasets of Kayu Bawang (Azadirachta excelsa (Jack) Jacobs) from 3 different identified seed stands in Bengkulu (Sumatra), Indonesia and its phylogenetic relationships
[version 1; peer review: 2 approved with reservations]
Efratenta Katherina Depari, Nurheni Wijayanto, Lina Karlinasari, Mohamad Rafi, Iskandar Zulkarnaen Siregar
Peer Reviewers Hoang Dang Khoa Do; Maria Stefanie Dwiyanti
  • Funder
  • Beasiswa Pendidikan Pascasarjana Dalam Negeri (BPPDN) 2019
PUBLISHED 05 Apr 2024
https://doi.org/10.12688/f1000research.138150.3
Genome Note metrics
Revised
Plastid genome of Passiflora tripartita var. mollissima (poro-poro) from Huánuco, Peru
[version 3; peer review: 2 approved]
Flavio Aliaga, Mario Zapata-Cruz, Silvia Ana Valverde-Zavaleta
Peer Reviewers Rahul G Shelke; Abdullah Abdullah
  • Funder
  • Plant Sience Laboratory
LATEST VERSION PUBLISHED 19 Feb 2024
https://doi.org/10.12688/f1000research.129958.4
Research Article metrics
Revised
The first released available genome of the common ice plant (Mesembryanthemum crystallinum L.) extended the research region on salt tolerance, C3-CAM photosynthetic conversion, and halophilism
[version 4; peer review: 2 approved, 1 approved with reservations]
Ryoma Sato, Yuri Kondo, Sakae Agarie
Peer Reviewers Qijie Guan; Xin-Guang Zhu; Zbigniew Miszalski
  • Funder
  • JSPS KAKENHI
LATEST VERSION PUBLISHED 04 Jan 2024
https://doi.org/10.12688/f1000research.138571.2
Genome Note metrics
Revised
The genome sequence of the critically endangered Kroombit tinkerfrog (Taudactylus pleione)
[version 2; peer review: 3 approved]
Katherine A. Farquharson, Elspeth A. McLennan, Katherine Belov, Carolyn J. Hogg
Peer Reviewers Natalie Forsdick; Sandra Goutte; Matheus Azambuja
  • Funders
  • Australian Federal Government Bushfire Recovery Scheme
  • Australian Research Council Centre of Excellence for Innovations in Peptide and Protein Science
  • NCRIS supported Bioplatforms Australia Threatened Species Initiative
LATEST VERSION PUBLISHED 16 Nov 2023
https://doi.org/10.12688/f1000research.122019.2
Research Article metrics
Revised
Observation of SARS-CoV-2 genome characteristics and clinical manifestations within eight family clusters from GH and GK clades in Jakarta, Indonesia
[version 2; peer review: 2 approved with reservations, 2 not approved]
Fera Ibrahim, Augustine Natasha, Andi Yasmon, Fithriyah Fithriyah, Anis Karuniawati, Rivia Gina Rahmawaty, Yulia Saharman, Pratiwi Sudarmono
Peer Reviewers So Nakagawa; Serafeim C. Chaintoutis; Pakorn Aiewsakun; Gusti N Mahardika
  • Funder
  • Direktorat Riset and Pengembangan, Universitas Indonesia
LATEST VERSION PUBLISHED 16 Oct 2023
https://doi.org/10.12688/f1000research.130251.2
Brief Report metrics
Revised
Multiomic sequencing of paired primary and metastatic small bowel carcinoids
[version 2; peer review: 2 approved]
Mackenzie D. Postel, Sourat Darabi, James R. Howe, Winnie S. Liang, David W. Craig, Michael J. Demeure
Peer Reviewers Phillip Stafford; Anela Blažević
  • Funder
  • WHH Foundation
LATEST VERSION PUBLISHED 04 Oct 2023
https://doi.org/10.12688/f1000research.127937.2
Genome Note metrics
Revised
Characterization of the Complete Chloroplast Genome of Gaultheria nummularioides D.Don 1825 (Ericaceae)
[version 2; peer review: 2 approved]
Xiao-Juan Cheng, Yan-Ling Xu, Catherine M. Bush, Yan-Jun Lin, Xin-Yu Du, Lu Lu
Peer Reviewers Xing Huang; Hoang Dang Khoa Do
  • Funders
  • Program Innovative Research Team in Science and Technology in Yunnan Province
  • National Natural Science Foundation of China
  • Scientific Research Fund Project of Yunnan Education Department
LATEST VERSION PUBLISHED 04 Sep 2023
https://doi.org/10.12688/f1000research.135174.1
Genome Note metrics
Complete mitochondrial genome and the phylogenetic position of a new Annelida species belonging to the genus Syllis
[version 1; peer review: 1 approved with reservations, 1 not approved]
Jun Young Chae, JinHo Kim, Tae-Wook Kang, Jae il Lee, Hyung-Ho Lee, Moo-Sang Kim
Peer Reviewers Yingdong Li; Zhi Wang
  • Funder
  • National Research Foundation
PUBLISHED 31 Aug 2023
https://doi.org/10.12688/f1000research.131326.2
Research Article metrics
Revised
Genetic diversity and population structure of Capitulum mitella (Linnaeus, 1767) in Fujian (China) revealed by mtDNA COI sequences
[version 2; peer review: 2 approved]
Rouxin Sun, Zhilan Zhang, Qiong Wu, Peng Xiang, Yanguo Wang, Bingpeng Xing
Peer Reviewers Jun Sun; Alex Nahnson Nehemia
  • Funders
  • The Marine Biological Sample Museum
  • Department of Science and Technology of Fujian Province, China
  • Natural Science Foundation of Xiamen, China
LATEST VERSION PUBLISHED 13 Jul 2023
https://doi.org/10.12688/f1000research.131283.2
Genome Note metrics
Revised
The genome sequence of the Loggerhead sea turtle, Caretta caretta Linnaeus 1758
[version 2; peer review: 2 approved]
Glenn Chang, Samantha Jones, Sreeja Leelakumari, Jahanshah Ashkani, Luka Culibrk, Kieran O'Neill, Kane Tse, Dean Cheng, Eric Chuah, Helen McDonald, Heather Kirk, Pawan Pandoh, Sauro Pari, Valeria Angelini, Christopher Kyle, Giorgio Bertorelle, Yongjun Zhao, Andrew Mungall, Richard Moore, Sibelle Vilaça, Steven Jones
Peer Reviewers Richard Challis; Cinta Pegueroles
  • Funders
  • Canadian BioGenome Project
  • CanSeq150 program
  • European Union's Horizon 2020 Research and Innovation Programme (Marie Skłodowska-Curie grant agreement)
LATEST VERSION PUBLISHED 27 Jun 2023
https://doi.org/10.12688/f1000research.127990.2
Genome Note metrics
Revised
Draft genome sequences of three emerging beta-lactamase-producing Escherichia coli in the camel production system in Northern Kenya
[version 2; peer review: 2 approved]
Rachael Gachogo, Irene Karegi, Brian Ogoti, Victor Musyoki, Dino Martins, Frank Onyambu, Joseph Kamau
Peer Reviewers Meenakshi S. Iyer; Janet Midega
LATEST VERSION PUBLISHED 16 May 2023
https://doi.org/10.12688/f1000research.121402.2
Genome Note metrics
Revised
Whole genome sequencing data of Candida krusei, the pathogen causing Candidaemia, from Department of Parasitology Culture Collection, Faculty of Medicine Universitas Indonesia
[version 2; peer review: 2 approved]
Fadilah Fadilah, Robiatul Adawiyah, Retno Wahyuningsih, Anna Rozaliyani, Ayu Eka Fatril, Rafika Indah Paramita, Linda Erlina, Khaerunissa Anbar Istiadi
Peer Reviewers Xuepeng Sun; Atanu Banerjee
  • Funder
  • Universitas Indonesia
LATEST VERSION PUBLISHED 29 Mar 2023
https://doi.org/10.12688/f1000research.130734.1
Genome Note metrics
The first genome sequence of Anopheles squamous from Macha, Zambia
[version 1; peer review: 2 approved]
Valerie T. Nguyen, Travis C. Collier, Sangwoo Seok, Xiaodi Wang, Monicah M. Mburu, Limonty Simubali, Mary E. Gebhardt, Douglas E. Norris, Yoosook Lee
Peer Reviewers Megan A. Riddin; Tara Roth
  • Funders
  • Department of Entomology and Nematology, University of Florida
  • University of Florida
  • Johns Hopkins Malaria Research Institute, Johns Hopkins Bloomberg School of Public Health
  • National Institutes of Health
  • College of Agricultural and Life Sciences, University of Florida
  • Bloomberg Philanthropies
PUBLISHED 24 Mar 2023
https://doi.org/10.12688/f1000research.131637.1
Genome Note metrics
The complete genome sequences of Penicillium concavorugulosum
[version 1; peer review: 1 not approved]
Khosi Ramachela, Galaletsang Segone
Peer Reviewers Anthony A. Adegoke
PUBLISHED 23 Mar 2023
21-40 of 70 ARTICLES
Previous Next
Gateway Areas
Sign In
If you've forgotten your password, please enter your email address below and we'll send you instructions on how to reset your password.

The email address should be the one you originally registered with F1000.
Email address not valid, please try again

You registered with F1000 via Google, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Google account password, please click here.

You registered with F1000 via Facebook, so we cannot reset your password.

To sign in, please click here.

If you still need help with your Facebook account password, please click here.

Code not correct, please try again
Email us for further assistance.
Server error, please try again.