Genomics and Genetics

Genomics and Genetics

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81-100 of 170 ARTICLES
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 in 
https://doi.org/10.12688/f1000research.127937.2
Genome Note metrics
Revised
Characterization of the Complete Chloroplast Genome of Gaultheria nummularioides D.Don 1825 (Ericaceae)
[version 2; peer review: 2 approved]
Xiao-Juan Cheng, Yan-Ling Xu, Catherine M. Bush, Yan-Jun Lin, Xin-Yu Du, Lu Lu
Peer Reviewers Xing Huang; Hoang Dang Khoa Do
  • Funders
  • Program Innovative Research Team in Science and Technology in Yunnan Province
  • National Natural Science Foundation of China
  • Scientific Research Fund Project of Yunnan Education Department
LATEST VERSION PUBLISHED 04 Sep 2023
https://doi.org/10.12688/f1000research.135174.1
Genome Note metrics
Complete mitochondrial genome and the phylogenetic position of a new Annelida species belonging to the genus Syllis
[version 1; peer review: 1 approved with reservations, 1 not approved]
Jun Young Chae, JinHo Kim, Tae-Wook Kang, Jae il Lee, Hyung-Ho Lee, Moo-Sang Kim
Peer Reviewers Yingdong Li; Zhi Wang
  • Funder
  • National Research Foundation
PUBLISHED 31 Aug 2023
https://doi.org/10.12688/f1000research.134705.1
Genome Note metrics
The complete mitochondrial genome sequence of Rikuzen flounder, Dexistes rikuzenius (Jordan & Starks, 1904)
[version 1; peer review: 2 approved with reservations]
Jun Young Chae, JinHo Kim, Tae-Wook Kang, Jinkoo Kim, Hyung-Ho Lee, Moo-Sang Kim
Peer Reviewers Euna Jo; Michael W Sandel
  • Funder
  • Korea Institute of Marine Science and Technology promotion
PUBLISHED 07 Aug 2023
https://doi.org/10.12688/f1000research.129050.2
Systematic Review metrics
Revised
Polymorphism studies and candidate genes associated with litter size traits in Indonesian goats. a systematic review
[version 2; peer review: 1 approved, 1 not approved]
Mutasem Abuzahra, Loay Abu Eid, Mustofa Helmi Effendi, Imam Mustofa, Mirni Lamid, Saifur Rehman
Peer Reviewers Mohammadreza Mohammadabadi; Zhanerke Akhatayeva
  • Funder
  • Universitas Airlangga
LATEST VERSION PUBLISHED 01 Aug 2023
https://doi.org/10.12688/f1000research.134814.1
Research Article metrics
Amanita thiersii and Amanita foetens are closely related but genetically and geographically distinct species, leaving the origins of A. thiersii and its range expansion enigmatic
[version 1; peer review: 2 approved with reservations, 1 not approved]
Nora Dunkirk, Yen-Wen Wang, Milton T. Drott, Holly Elmore, Gerardo Robledo, Rodham E. Tulloss, Anne Pringle
Peer Reviewers Duur K Aanen; Julieta Alvarez Manjarrez; Martin P A Coetzee
  • Funders
  • Mary Herman Rubinstein and the University of Wisconsin-Madison
  • Advanced Opportunity Fellowship from the University of Wisconsin-Madison
  • Department of Botany at the University of Wisconsin-Madison
PUBLISHED 20 Jul 2023
https://doi.org/10.12688/f1000research.131326.2
Research Article metrics
Revised
Genetic diversity and population structure of Capitulum mitella (Linnaeus, 1767) in Fujian (China) revealed by mtDNA COI sequences
[version 2; peer review: 2 approved]
Rouxin Sun, Zhilan Zhang, Qiong Wu, Peng Xiang, Yanguo Wang, Bingpeng Xing
Peer Reviewers Jun Sun; Alex Nahnson Nehemia
  • Funders
  • The Marine Biological Sample Museum
  • Department of Science and Technology of Fujian Province, China
  • Natural Science Foundation of Xiamen, China
LATEST VERSION PUBLISHED 13 Jul 2023
https://doi.org/10.12688/f1000research.131283.2
Genome Note metrics
Revised
The genome sequence of the Loggerhead sea turtle, Caretta caretta Linnaeus 1758
[version 2; peer review: 2 approved]
Glenn Chang, Samantha Jones, Sreeja Leelakumari, Jahanshah Ashkani, Luka Culibrk, Kieran O'Neill, Kane Tse, Dean Cheng, Eric Chuah, Helen McDonald, Heather Kirk, Pawan Pandoh, Sauro Pari, Valeria Angelini, Christopher Kyle, Giorgio Bertorelle, Yongjun Zhao, Andrew Mungall, Richard Moore, Sibelle Vilaça, Steven Jones
Peer Reviewers Richard Challis; Cinta Pegueroles
  • Funders
  • Canadian BioGenome Project
  • CanSeq150 program
  • European Union's Horizon 2020 Research and Innovation Programme (Marie Skłodowska-Curie grant agreement)
LATEST VERSION PUBLISHED 27 Jun 2023
https://doi.org/10.12688/f1000research.133935.1
Data Note metrics
Time-resolved small RNA transcriptomics of the ichthyosporean Sphaeroforma arctica
[version 1; peer review: 2 approved]
Andrej Ondracka, Omaya Dudin, Jon Bråte
Peer Reviewers Rafał Milanowski; Arkadiy Garber
  • Funders
  • Norges Forskningsråd
  • Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung
  • H2020 Marie Skłodowska-Curie Actions
PUBLISHED 24 May 2023
https://doi.org/10.12688/f1000research.127990.2
Genome Note metrics
Revised
Draft genome sequences of three emerging beta-lactamase-producing Escherichia coli in the camel production system in Northern Kenya
[version 2; peer review: 2 approved]
Rachael Gachogo, Irene Karegi, Brian Ogoti, Victor Musyoki, Dino Martins, Frank Onyambu, Joseph Kamau
Peer Reviewers Meenakshi S. Iyer; Janet Midega
LATEST VERSION PUBLISHED 16 May 2023
https://doi.org/10.12688/f1000research.36395.2
Method Article metrics
Revised
Organizing training workshops on gene literature retrieval, profiling, and visualization for early career researchers
[version 2; peer review: 2 approved]
Fatima Al Ali, Alexandra K Marr, Zohreh Tatari-Calderone, Mohamed Alfaki, Mohammed Toufiq, Jessica Roelands, Basirudeen Syed Ahamed Kabeer, Davide Bedognetti, Nico Marr, Mathieu Garand, Darawan Rinchai, Damien Chaussabel
Peer Reviewers Gary S. McDowell; Valerie Matarese
  • Funder
  • Qatar National Research Fund
LATEST VERSION PUBLISHED 11 May 2023
https://doi.org/10.12688/f1000research.133270.1
Brief Report metrics
High copy number of multi-drug resistance genes in spent coffee grounds used in organic composting
[version 1; peer review: 1 approved with reservations]
Jinpao Hou, Yuen Ting Chiu, Kit-ling Lam, Ki-ying Kwong, Johnny Hoi-lung Lau, Lawal M. Marafa, Stephen Kwok-wing Tsui, Ian Wing-yin Mo, Ping Lung Chan
Peer Reviewers Tam Tran
  • Funders
  • Hong Kong Metropolitan University
  • Research Grants Council of the Hong Kong Special Administrative Region
PUBLISHED 11 May 2023
https://doi.org/10.12688/f1000research.111995.3
Systematic Review metrics
Revised
The role of genetic factors in microtia: A systematic review
[version 3; peer review: 2 approved with reservations, 1 not approved]
Indri Lakhsmi Putri, Alexandria Stephanie, Rachmaniar Pramanasari, Moshe Kon, Citrawati Dyah Kencono Wungu
Peer Reviewers Walid D. Fakhouri; Isabella Monlleó; Miriam Erandi Reyna-Fabian
LATEST VERSION PUBLISHED 26 Apr 2023
https://doi.org/10.12688/f1000research.129929.2
Research Article metrics
Revised
Disease association and comparative genomics of compositional bias in human proteins
[version 2; peer review: 2 approved]
Christos E. Kouros, Vasiliki Makri, Christos A. Ouzounis, Anastasia Chasapi
Peer Reviewers Stella Tamana; Gregory Amoutzias
  • Funders
  • European Social Fund
  • European Regional Development Fund
LATEST VERSION PUBLISHED 14 Apr 2023
https://doi.org/10.12688/f1000research.111658.2
Software Tool Article metrics
Revised
GRAPE: genomic relatedness detection pipeline
[version 2; peer review: 2 approved]
Alexander Medvedev, Mikhail Lebedev, Andrew Ponomarev, Mikhail Kosaretskiy, Dmitriy Osipenko, Alexander Tischenko, Egor Kosaretskiy, Hui Wang, Dmitry Kolobkov, Vitalina Chamberlain-Evans, Ruslan Vakhitov, Pavel Nikonorov
Peer Reviewers Ying Zhou; Ardalan Naseri
  • Funder
  • GenX Global Limited
LATEST VERSION PUBLISHED 13 Apr 2023
https://doi.org/10.12688/f1000research.126463.2
Software Tool Article metrics
Revised
A2TEA: Identifying trait-specific evolutionary adaptations
[version 2; peer review: 2 approved]
Tyll Stöcker, Carolin Uebermuth-Feldhaus, Florian Boecker, Heiko Schoof
Peer Reviewers Manuel Aranda and Octavio Salazar Moya; Rahul Siddharthan
LATEST VERSION PUBLISHED 12 Apr 2023
https://doi.org/10.12688/f1000research.76218.2
Review metrics
Revised
Polygenic Risk Score in African populations: progress and challenges
[version 2; peer review: 2 approved]
Yagoub Adam, Suraju Sadeeq, Judit Kumuthini, Olabode Ajayi, Gordon Wells, Rotimi Solomon, Olubanke Ogunlana, Emmanuel Adetiba, Emeka Iweala, Benedikt Brors, Ezekiel Adebiyi
Peer Reviewers Bingxin Zhao; Cathryn M. Lewis and Michelle Kamp
  • Funders
  • World Bank
  • National Human Genome Research Institute
LATEST VERSION PUBLISHED 11 Apr 2023
https://doi.org/10.12688/f1000research.129036.2
Review metrics
Revised
Studying ancient human oral microbiomes could yield insights into the evolutionary history of noncommunicable diseases
[version 2; peer review: 2 approved]
Abigail S Gancz, Laura S Weyrich
Peer Reviewers Sarah Schrader; Taylor van Doren
  • Funder
  • National Science Foundation
LATEST VERSION PUBLISHED 06 Apr 2023
https://doi.org/10.12688/f1000research.109628.2
Case Report metrics
Revised
Case Report: Identification of likely recurrent CEP290 mutation in a child with Joubert syndrome and cerebello-retinal-renal features.
[version 2; peer review: 2 approved]
Lidvana Spahiu, John A Sayer, Emir Behluli, Thomas Liehr, Gazmend Temaj
Peer Reviewers Muhammad Ansar; Karen I. Lange
  • Funders
  • Kidney Research UK
  • Northern Counties Kidney Research Fund
LATEST VERSION PUBLISHED 31 Mar 2023
https://doi.org/10.12688/f1000research.121402.2
Genome Note metrics
Revised
Whole genome sequencing data of Candida krusei, the pathogen causing Candidaemia, from Department of Parasitology Culture Collection, Faculty of Medicine Universitas Indonesia
[version 2; peer review: 2 approved]
Fadilah Fadilah, Robiatul Adawiyah, Retno Wahyuningsih, Anna Rozaliyani, Ayu Eka Fatril, Rafika Indah Paramita, Linda Erlina, Khaerunissa Anbar Istiadi
Peer Reviewers Xuepeng Sun; Atanu Banerjee
  • Funder
  • Universitas Indonesia
LATEST VERSION PUBLISHED 29 Mar 2023
https://doi.org/10.12688/f1000research.126227.3
Research Article metrics
Revised
Targeting Acanthamoeba proteins interaction with flavonoids of Propolis extract by in vitro and in silico studies for promising therapeutic effects
[version 3; peer review: 2 approved]
Imran Sama-ae, Suthinee Sangkanu, Abolghasem Siyadatpanah, Roghayeh Norouzi, Julalak Chuprom, Watcharapong Mitsuwan, Sirirat Surinkaew, Rachasak Boonhok, Alok K. Paul, Tooba Mahboob, Najme Sadat Abtahi, Tajudeen O. Jimoh, Sónia M.R. Oliveira, Madhu Gupta, Chea Sin, Maria de Lourdes Pereira, Polrat Wilairatana, Christophe Wiart, Mohammed Rahmatullah, Karma G. Dolma, Veeranoot Nissapatorn
Peer Reviewers Akm Moyeenul Huq; Ascel Samba-Louaka
  • Funder
  • The Royal Patronage of Her Royal Highness Princess Maha Chakri Sirindhorn - Botanical Garden of Walailak University
LATEST VERSION PUBLISHED 27 Mar 2023
81-100 of 170 ARTICLES
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