Genome Note
metrics
Revised
The complete chloroplast genome of Dianthus helenae, an endemic species with medicinal potential from the Nuratau Range, Uzbekistan
[version 2; peer review: 1 approved with reservations]
Peer Reviewers
Hoang Dang Khoa Do
Genome Note
metrics
Revised
Complete chloroplast genomes of endemic Astragalus and Oxytropis species from Uzbekistan
[version 3; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers
Hoang Dang Khoa Do;
Yoshinori Fukasawa
- Funder
- This research was carried out within the framework of the projects “Digital Nature: Development of a digital platform for the flora of Central Uzbekistan” (2025–2029), and “Assessing climate change adaptation in endangered plants of Uzbekistan: A DNA barcoding approach” (AL-9224104464), implemented by the Institute of Botany, Academy of Sciences of the Republic of Uzbekistan.
Research Article
metrics
Revised
Beyond the Beauty: Meristic and Genomic Signatures of Bangka’s Endemic Betta Fishes
[version 2; peer review: 2 approved with reservations]
Peer Reviewers
Bingpeng Xing;
Nicholas S Kron
- Funder
- Kementerian Riset Teknologi Dan Pendidikan Tinggi Republik Indonesia
Genome Note
metrics
AWAITING PEER REVIEW
The complete and annotated mitochondrial genome of Hemileia vastatrix Race I, causal agent of coffee leaf rust
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funder
- Colombian Coffee Growers Federation (FNC) / National Coffee Research Center (CENICAFE)
Research Article
metrics
Genomic characterization of ESBL-producing Escherichia coli isolates from patients in an orthopaedic ward in Mwanza, Tanzania
[version 1; peer review: 1 approved with reservations]
Peer Reviewers
Ayorinde O Afolayan
- Funders
- Fogarty International Center of the National Institutes of Health
- Grand Challenges Africa programme
- Grand Challenges Africa programme
Genome Note
metrics
Complete genome sequence of Halorubrum pleomorphic virus 8
[version 1; peer review: 1 approved]
Peer Reviewers
Jimmy Saw
- Funders
- the University of Helsinki and Research Council of Finland by funding for FINStruct and Instruct Centre FI, part of Biocenter Finland and Instruct-ERIC and Horizon MSCA
- Research Council of Finland
- Helsinki University Library
- European Research Council (ERC) under the European Union’s Horizon Europe research and innovation programme
- Kone Foundation
Genome Note
metrics
Revised
Draft genome sequence of a predatory bacterium from northern peatland soil
[version 2; peer review: 1 approved with reservations]
Peer Reviewers
Kai Blin and Judit Szenei
- Funders
- Research Council of Finland
- Kone Foundation
Research Article
metrics
Revised
Characterization of the Complete Mitochondrial Genome and Evaluation of COI Barcoding in Philonis inermis (Coleoptera: Curculionidae: Cryptorhynchinae) Using Genome Skimming
[version 3; peer review: 3 approved]
Peer Reviewers
Renee Ali;
Michael J Raupach;
Arun Arumugaperumal
- Funder
- This research was funded by the Gorgon Barrow Island Net Conservation Benefits Fund, administered by the Government of Western Australia, the Commonwealth Scientific and Industrial Research Organi-sation (CSIRO), and the Department of Biodiversity, Conservation and Attractions. Additional support was provided by Project Hermes 57653 (Universidad Nacional de Colombia, Sede Medellín).
Genome Note
metrics
Annotated genome of the Eucalyptus snout beetle, Gonipterus sp. n. 2 (Coleoptera, Curculionidae)
[version 1; peer review: 1 approved with reservations, 1 not approved]
Peer Reviewers
Christopher Cunningham;
Maria Antonia Madrid Restrepo
- Funders
- National Research Foundation
- Future Leaders—African Independent Research (FLAIR) fellowship
Brief Report
metrics
Phylogenomic placement, description, and mitochondrial genome of a novel freshwater goniomonad (Cryptista) from Arizona: Naiadagoniomonas ponderosa n. gen. n. sp.
[version 1; peer review: 1 approved, 1 approved with reservations]
Peer Reviewers
Shahed U. A. Shazib;
Rory J Craig
- Funder
- Directorate for Biological Sciences
Genome Note
metrics
Revised
The first whole-genome sequence of a prospective novel sponge-associated Streptomyces strain from Indonesia with a long 1.5 Mbp terminal inverted repeat
[version 3; peer review: 2 approved]
Peer Reviewers
Arzu Karahan;
Matsapume Detcharoen
- Funders
- Rumah Program Biodiversitas, ORHL-BRIN
- Rumah Program Artificial, Intelligence, Big Data & Teknologi Komputasi, OREI-BRIN
- Riset dan Inovasi untuk Indonesia Maju—Indonesia Endowment Funds for Education (LPDP)
Genome Note
metrics
AWAITING PEER REVIEW
The complete genome sequence of the ghost bat, Macroderma gigas
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funders
- Australian Research Council Linkage Project “The Macroderma initiative: conserving ghost bats and informing development
- Australian Research Council
- Australian Government National Collaborative Research Infrastructure Strategy (NCRIS)
Genome Note
metrics
Revised
Re-sequencing of the complete chloroplast genome of Cinnamomum burmanni (Nees & T.Nees) Blume (Lauraceae) from Indonesia using MinION Oxford Nanopore Technologies
[version 3; peer review: 3 approved, 2 not approved]
Peer Reviewers
Hoang Dang Khoa Do;
Jakub Sawicki;
Minh Trong Quang;
Nawaz Haider Bashir;
Zinian WU
- Funder
- National Competitive Basic Research 2022-2023
Research Article
metrics
AWAITING PEER REVIEW
Diversity and functionality of the gut microbiota in hypertensive patients from different regions of Peru
[version 1; peer review: awaiting peer review]
Peer Reviewers
Invited
- Funder
- Universidad Peruana Unión
Genome Note
metrics
Revised
The complete chloroplast genome of Phyllanthus acidus (L.) Skeels (Phyllanthaceae)
[version 3; peer review: 1 approved, 4 approved with reservations]
Peer Reviewers
Jessica D. Rey;
Qiang Li;
Shiou Yih Lee;
Yoshinori Fukasawa;
Sunil Kumar Sahu
- Funder
- Nguyen Tat Thanh University
Genome Note
metrics
Revised
Reference-guided draft genome assembly of the slender walking catfish, Prophagorus nieuhofii
[version 2; peer review: 1 approved, 2 approved with reservations, 1 not approved]
Peer Reviewers
Gulab D. Khedkar;
Geoffrey C. Waldbieser;
Haiyang Liu;
Adauto Cardoso
- Funder
- Lembaga Pengelola Dana Pendidikan
Software Tool Article
metrics
Sixth Annual BCM Hackathon on Structural Variation and Pangenomics
[version 1; peer review: 2 approved with reservations]
Peer Reviewers
Istvan Albert;
Colin Diesh
- Funders
- Shwetha V Kumar is supported by CPRIT grant #RP210037 (PI Aaron Thrift)
- Ryan Doughty is supported by a training fellowship from the Gulf Coast Consortia, on the NLM Training Program in Biomedical Informatics & Data Science (T15LM007093)
- Sarah Fross is supported by a training grant from the National Institutes of Health under Award Number 5T32GM135748-04.
- Sedlazeck NIH grant: 1UG3NS132105-01, 1U01HG011758-01
- Jędrzej Kubica is supported by the Ministry of Science and Higher Education (Poland) as a project under the program Excellence Initiative – Research University (2020–2026) (decision no.: IV.2.3./30/2024) and the France 2030 state funding managed by the National Research Agency with the reference
- Shaghayegh Beheshti is supported by a training grant from the National Institutes of Health under Award Number 5T32GM139534-04 and NHGRI U01 HG011758.
- The research was supported by Cancer Prevention and Research Institute of Texas under grant number: #RP210037
Genome Note
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Chromosome-level genome assembly of the hamour (orange-spotted grouper), Epinephelus coioides
[version 1; peer review: 2 approved, 1 approved with reservations]
Peer Reviewers
Jayan Duminda M Senevirathna;
Merly Escalona;
Karim Gharbi
- Funders
- Spanish Government, Ministry of Science, Innovation and Universities and Generalitat de Catalunya through the Departament de Recerca i Universitats and Departament de Salut
- Qatar National Research Fund
- Roslin Institute Strategic Programme Award
Genome Note
metrics
Revised
The complete mitochondrial genome Hainan Gymnure, Neohylomys hainanensis
[version 2; peer review: 3 approved]
Peer Reviewers
Michael Allen;
Perinçek Seçkinozan Şeker;
Kai He
- Funder
- Natural Science Foundation of Hainan Province
Genome Note
metrics
Revised
The genome sequence of Tethysbaena scabra (Pretus, 1991), the first known in the peracarid crustacean order Thermosbaenacea.
[version 3; peer review: 2 approved]
Peer Reviewers
Pascal Angst;
Martin Schwentner
- Funders
- Govern de les Illes Balears
- Institut d'Estudis Catalans